org.apache.sysds.runtime.util

Class DataConverter

java.lang.Object

org.apache.sysds.runtime.util.DataConverter

public class DataConverter
extends Object

This class provides methods to read and write matrix blocks from to HDFS using different data formats. Those functionalities are used especially for CP read/write and exporting in-memory matrices to HDFS (before executing MR jobs).

Constructor Summary

Constructors

Constructor and Description
DataConverter()

Method Summary

Modifier and Type	Method and Description
static org.apache.commons.math3.linear.Array2DRowRealMatrix	convertToArray2DRowRealMatrix(MatrixBlock mb) Helper method that converts SystemDS matrix variable (varname) into a Array2DRowRealMatrix format, which is useful in invoking Apache CommonsMath.
static org.apache.commons.math3.linear.BlockRealMatrix	convertToBlockRealMatrix(MatrixBlock mb)
static boolean[]	convertToBooleanVector(MatrixBlock mb)
static DenseBlock	convertToDenseBlock(MatrixBlock mb)
static DenseBlock	convertToDenseBlock(MatrixBlock mb, boolean deep)
static List<Double>	convertToDoubleList(MatrixBlock mb)
static double[][]	convertToDoubleMatrix(MatrixBlock mb) Creates a two-dimensional double matrix of the input matrix block.
static double[]	convertToDoubleVector(MatrixBlock mb)
static double[]	convertToDoubleVector(MatrixBlock mb, boolean deep)
static double[]	convertToDoubleVector(MatrixBlock mb, boolean deep, boolean allowNull)
static FrameBlock	convertToFrameBlock(MatrixBlock mb) Converts a matrix block into a frame block of value type double.
static FrameBlock	convertToFrameBlock(MatrixBlock mb, Types.ValueType vt) Converts a matrix block into a frame block of a given value type.
static FrameBlock	convertToFrameBlock(MatrixBlock mb, Types.ValueType[] schema)
static FrameBlock	convertToFrameBlock(String[][] data) Converts a two dimensions string array into a frame block of value type string.
static FrameBlock	convertToFrameBlock(String[][] data, Types.ValueType[] schema)
static FrameBlock	convertToFrameBlock(String[][] data, Types.ValueType[] schema, String[] colnames)
static int[]	convertToIntVector(MatrixBlock mb)
static long[]	convertToLongVector(MatrixBlock mb)
static MatrixBlock	convertToMatrixBlock(CTableMap map)
static MatrixBlock	convertToMatrixBlock(CTableMap map, int rlen, int clen) NOTE: this method also ensures the specified matrix dimensions
static MatrixBlock	convertToMatrixBlock(double[][] data) Creates a dense Matrix Block and copies the given double matrix into it.
static MatrixBlock	convertToMatrixBlock(double[] data, boolean columnVector) Creates a dense Matrix Block and copies the given double vector into it.
static MatrixBlock	convertToMatrixBlock(FrameBlock frame) Converts a frame block with arbitrary schema into a matrix block.
static MatrixBlock	convertToMatrixBlock(HashMap<MatrixIndexes,Double> map)
static MatrixBlock	convertToMatrixBlock(HashMap<MatrixIndexes,Double> map, int rlen, int clen) NOTE: this method also ensures the specified matrix dimensions
static MatrixBlock	convertToMatrixBlock(int[][] data) Converts an Integer matrix to an MatrixBlock
static MatrixBlock	convertToMatrixBlock(org.apache.commons.math3.linear.RealMatrix rm)
static MatrixBlock[]	convertToMatrixBlockPartitions(MatrixBlock mb, boolean colwise)
static String[][]	convertToStringFrame(FrameBlock frame) Converts a frame block with arbitrary schema into a two dimensional string array.
static TensorBlock	convertToTensorBlock(MatrixBlock mb, Types.ValueType vt, boolean toBasicTensor)
static void	copyToDoubleVector(MatrixBlock mb, double[] dest, int destPos)
static int[]	getTensorDimensions(ExecutionContext ec, CPOperand dims)
static MatrixBlock	readMatrixFromHDFS(ReadProperties prop) Core method for reading matrices in format textcell, matrixmarket, binarycell, or binaryblock from HDFS into main memory.
static MatrixBlock	readMatrixFromHDFS(String dir, Types.FileFormat fmt, long rlen, long clen, int blen)
static MatrixBlock	readMatrixFromHDFS(String dir, Types.FileFormat fmt, long rlen, long clen, int blen, boolean localFS)
static MatrixBlock	readMatrixFromHDFS(String dir, Types.FileFormat fmt, long rlen, long clen, int blen, long expectedNnz)
static MatrixBlock	readMatrixFromHDFS(String dir, Types.FileFormat fmt, long rlen, long clen, int blen, long expectedNnz, boolean localFS)
static MatrixBlock	readMatrixFromHDFS(String dir, Types.FileFormat fmt, long rlen, long clen, int blen, long expectedNnz, FileFormatProperties formatProperties)
static TensorBlock	readTensorFromHDFS(String dir, Types.FileFormat fmt, long[] dims, int blen, Types.ValueType[] schema)
static BitSet	toBitSet(double[] data)
static double[]	toDouble(BitSet data, int len)
static double[]	toDouble(float[] data)
static double[]	toDouble(int[] data)
static double[]	toDouble(long[] data)
static double[]	toDouble(String[] data)
static float[]	toFloat(double[] data)
static int[]	toInt(double[] data)
static long[]	toLong(double[] data)
static String[]	toString(double[] data)
static String	toString(FrameBlock fb)
static String	toString(FrameBlock fb, boolean sparse, String separator, String lineseparator, int rowsToPrint, int colsToPrint, int decimal)
static String	toString(ListObject list, int rows, int cols, boolean sparse, String separator, String lineSeparator, int rowsToPrint, int colsToPrint, int decimal)
static String	toString(MatrixBlock mb)
static String	toString(MatrixBlock mb, boolean sparse, String separator, String lineseparator, int rowsToPrint, int colsToPrint, int decimal) Returns a string representation of a matrix
static String	toString(TensorBlock tb)
static String	toString(TensorBlock tb, boolean sparse, String separator, String lineseparator, String leftBorder, String rightBorder, int rowsToPrint, int colsToPrint, int decimal) Returns a string representation of a tensor
static void	writeMatrixToHDFS(MatrixBlock mat, String dir, Types.FileFormat fmt, DataCharacteristics dc)
static void	writeMatrixToHDFS(MatrixBlock mat, String dir, Types.FileFormat fmt, DataCharacteristics dc, int replication, FileFormatProperties formatProperties)
static void	writeMatrixToHDFS(MatrixBlock mat, String dir, Types.FileFormat fmt, DataCharacteristics dc, int replication, FileFormatProperties formatProperties, boolean diag)
static void	writeTensorToHDFS(TensorBlock tensor, String dir, Types.FileFormat fmt, DataCharacteristics dc)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataConverter

public DataConverter()

Method Detail

writeMatrixToHDFS

public static void writeMatrixToHDFS(MatrixBlock mat,
                                     String dir,
                                     Types.FileFormat fmt,
                                     DataCharacteristics dc)
                              throws IOException

Throws:

IOException

writeMatrixToHDFS

public static void writeMatrixToHDFS(MatrixBlock mat,
                                     String dir,
                                     Types.FileFormat fmt,
                                     DataCharacteristics dc,
                                     int replication,
                                     FileFormatProperties formatProperties)
                              throws IOException

Throws:

IOException

writeMatrixToHDFS

public static void writeMatrixToHDFS(MatrixBlock mat,
                                     String dir,
                                     Types.FileFormat fmt,
                                     DataCharacteristics dc,
                                     int replication,
                                     FileFormatProperties formatProperties,
                                     boolean diag)
                              throws IOException

Throws:

IOException

writeTensorToHDFS

public static void writeTensorToHDFS(TensorBlock tensor,
                                     String dir,
                                     Types.FileFormat fmt,
                                     DataCharacteristics dc)
                              throws IOException

Throws:

IOException

readMatrixFromHDFS

public static MatrixBlock readMatrixFromHDFS(String dir,
                                             Types.FileFormat fmt,
                                             long rlen,
                                             long clen,
                                             int blen,
                                             boolean localFS)
                                      throws IOException

Throws:

IOException

readMatrixFromHDFS

public static MatrixBlock readMatrixFromHDFS(String dir,
                                             Types.FileFormat fmt,
                                             long rlen,
                                             long clen,
                                             int blen)
                                      throws IOException

Throws:

IOException

readMatrixFromHDFS

public static MatrixBlock readMatrixFromHDFS(String dir,
                                             Types.FileFormat fmt,
                                             long rlen,
                                             long clen,
                                             int blen,
                                             long expectedNnz)
                                      throws IOException

Throws:

IOException

readMatrixFromHDFS

public static MatrixBlock readMatrixFromHDFS(String dir,
                                             Types.FileFormat fmt,
                                             long rlen,
                                             long clen,
                                             int blen,
                                             long expectedNnz,
                                             boolean localFS)
                                      throws IOException

Throws:

IOException

readMatrixFromHDFS

public static MatrixBlock readMatrixFromHDFS(String dir,
                                             Types.FileFormat fmt,
                                             long rlen,
                                             long clen,
                                             int blen,
                                             long expectedNnz,
                                             FileFormatProperties formatProperties)
                                      throws IOException

Throws:

IOException

readTensorFromHDFS

public static TensorBlock readTensorFromHDFS(String dir,
                                             Types.FileFormat fmt,
                                             long[] dims,
                                             int blen,
                                             Types.ValueType[] schema)
                                      throws IOException

Throws:

IOException

readMatrixFromHDFS

public static MatrixBlock readMatrixFromHDFS(ReadProperties prop)
                                      throws IOException

Core method for reading matrices in format textcell, matrixmarket, binarycell, or binaryblock from HDFS into main memory. For expected dense matrices we directly copy value- or block-at-a-time into the target matrix. In contrast, for sparse matrices, we append (column-value)-pairs and do a final sort if required in order to prevent large reorg overheads and increased memory consumption in case of unordered inputs. DENSE MxN input: * best/average/worst: O(M*N) SPARSE MxN input * best (ordered, or binary block w/ clen<=blen): O(M*N) * average (unordered): O(M*N*log(N)) * worst (descending order per row): O(M * N^2) NOTE: providing an exact estimate of 'expected sparsity' can prevent a full copy of the result matrix block (required for changing sparse->dense, or vice versa)

Parameters:

prop - read properties

Returns:

matrix block

Throws:

IOException - if IOException occurs

convertToDoubleMatrix

public static double[][] convertToDoubleMatrix(MatrixBlock mb)

Creates a two-dimensional double matrix of the input matrix block.

Parameters:

mb - matrix block

Returns:

2d double array

convertToBooleanVector

public static boolean[] convertToBooleanVector(MatrixBlock mb)

convertToIntVector

public static int[] convertToIntVector(MatrixBlock mb)

convertToLongVector

public static long[] convertToLongVector(MatrixBlock mb)

convertToDenseBlock

public static DenseBlock convertToDenseBlock(MatrixBlock mb)

convertToDenseBlock

public static DenseBlock convertToDenseBlock(MatrixBlock mb,
                                             boolean deep)

convertToDoubleVector

public static double[] convertToDoubleVector(MatrixBlock mb)

convertToDoubleVector

public static double[] convertToDoubleVector(MatrixBlock mb,
                                             boolean deep)

convertToDoubleVector

public static double[] convertToDoubleVector(MatrixBlock mb,
                                             boolean deep,
                                             boolean allowNull)

convertToDoubleList

public static List<Double> convertToDoubleList(MatrixBlock mb)

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(double[][] data)

Creates a dense Matrix Block and copies the given double matrix into it.

Parameters:

data - 2d double array

Returns:

matrix block

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(int[][] data)

Converts an Integer matrix to an MatrixBlock

Parameters:

data - Int matrix input that is converted to double MatrixBlock

Returns:

The matrixBlock constructed.

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(double[] data,
                                               boolean columnVector)

Creates a dense Matrix Block and copies the given double vector into it.

Parameters:

data - double array

columnVector - if true, create matrix with single column. if false, create matrix with single row

Returns:

matrix block

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(HashMap<MatrixIndexes,Double> map)

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(HashMap<MatrixIndexes,Double> map,
                                               int rlen,
                                               int clen)

NOTE: this method also ensures the specified matrix dimensions

Parameters:

map - map of matrix index keys and double values

rlen - number of rows

clen - number of columns

Returns:

matrix block

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(CTableMap map)

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(CTableMap map,
                                               int rlen,
                                               int clen)

NOTE: this method also ensures the specified matrix dimensions

Parameters:

map - ?

rlen - number of rows

clen - number of columns

Returns:

matrix block

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(FrameBlock frame)

Converts a frame block with arbitrary schema into a matrix block. Since matrix block only supports value type double, we do a best effort conversion of non-double types which might result in errors for non-numerical data.

Parameters:

frame - frame block

Returns:

matrix block

convertToStringFrame

public static String[][] convertToStringFrame(FrameBlock frame)

Converts a frame block with arbitrary schema into a two dimensional string array.

Parameters:

frame - frame block

Returns:

2d string array

convertToFrameBlock

public static FrameBlock convertToFrameBlock(String[][] data)

Converts a two dimensions string array into a frame block of value type string. If the given array is null or of length 0, we return an empty frame block.

Parameters:

data - 2d string array

Returns:

frame block

convertToFrameBlock

public static FrameBlock convertToFrameBlock(String[][] data,
                                             Types.ValueType[] schema)

convertToFrameBlock

public static FrameBlock convertToFrameBlock(String[][] data,
                                             Types.ValueType[] schema,
                                             String[] colnames)

convertToFrameBlock

public static FrameBlock convertToFrameBlock(MatrixBlock mb)

Converts a matrix block into a frame block of value type double.

Parameters:

mb - matrix block

Returns:

frame block of type double

convertToFrameBlock

public static FrameBlock convertToFrameBlock(MatrixBlock mb,
                                             Types.ValueType vt)

Converts a matrix block into a frame block of a given value type.

Parameters:

mb - matrix block

vt - value type

Returns:

frame block

convertToFrameBlock

public static FrameBlock convertToFrameBlock(MatrixBlock mb,
                                             Types.ValueType[] schema)

convertToTensorBlock

public static TensorBlock convertToTensorBlock(MatrixBlock mb,
                                               Types.ValueType vt,
                                               boolean toBasicTensor)

convertToMatrixBlockPartitions

public static MatrixBlock[] convertToMatrixBlockPartitions(MatrixBlock mb,
                                                           boolean colwise)

convertToArray2DRowRealMatrix

public static org.apache.commons.math3.linear.Array2DRowRealMatrix convertToArray2DRowRealMatrix(MatrixBlock mb)

Helper method that converts SystemDS matrix variable (varname) into a Array2DRowRealMatrix format, which is useful in invoking Apache CommonsMath.

Parameters:

mb - matrix object

Returns:

matrix as a commons-math3 Array2DRowRealMatrix

convertToBlockRealMatrix

public static org.apache.commons.math3.linear.BlockRealMatrix convertToBlockRealMatrix(MatrixBlock mb)

convertToMatrixBlock

public static MatrixBlock convertToMatrixBlock(org.apache.commons.math3.linear.RealMatrix rm)

copyToDoubleVector

public static void copyToDoubleVector(MatrixBlock mb,
                                      double[] dest,
                                      int destPos)

toString

public static String toString(MatrixBlock mb)

toString

public static String toString(MatrixBlock mb,
                              boolean sparse,
                              String separator,
                              String lineseparator,
                              int rowsToPrint,
                              int colsToPrint,
                              int decimal)

Returns a string representation of a matrix

Parameters:

mb - matrix block

sparse - if true, string will contain a table with row index, col index, value (where value != 0.0) otherwise it will be a rectangular string with all values of the matrix block

separator - Separator string between each element in a row, or between the columns in sparse format

lineseparator - Separator string between each row

rowsToPrint - maximum number of rows to print, -1 for all

colsToPrint - maximum number of columns to print, -1 for all

decimal - number of decimal places to print, -1 for default

Returns:

matrix as a string

toString

public static String toString(TensorBlock tb)

toString

public static String toString(TensorBlock tb,
                              boolean sparse,
                              String separator,
                              String lineseparator,
                              String leftBorder,
                              String rightBorder,
                              int rowsToPrint,
                              int colsToPrint,
                              int decimal)

Returns a string representation of a tensor

Parameters:

tb - tensor block

sparse - if true, string will contain a table with row index, col index, value (where value != 0.0) otherwise it will be a rectangular string with all values of the tensor block

separator - Separator string between each element in a row, or between the columns in sparse format

lineseparator - Separator string between each row

leftBorder - Characters placed at the start of a new dimension level

rightBorder - Characters placed at the end of a new dimension level

rowsToPrint - maximum number of rows to print, -1 for all

colsToPrint - maximum number of columns to print, -1 for all

decimal - number of decimal places to print, -1 for default

Returns:

tensor as a string

toString

public static String toString(FrameBlock fb)

toString

public static String toString(FrameBlock fb,
                              boolean sparse,
                              String separator,
                              String lineseparator,
                              int rowsToPrint,
                              int colsToPrint,
                              int decimal)

toString

public static String toString(ListObject list,
                              int rows,
                              int cols,
                              boolean sparse,
                              String separator,
                              String lineSeparator,
                              int rowsToPrint,
                              int colsToPrint,
                              int decimal)

getTensorDimensions

public static int[] getTensorDimensions(ExecutionContext ec,
                                        CPOperand dims)

toDouble

public static double[] toDouble(float[] data)

toDouble

public static double[] toDouble(long[] data)

toDouble

public static double[] toDouble(int[] data)

toDouble

public static double[] toDouble(BitSet data,
                                int len)

toDouble

public static double[] toDouble(String[] data)

toFloat

public static float[] toFloat(double[] data)

toInt

public static int[] toInt(double[] data)

toLong

public static long[] toLong(double[] data)

toBitSet

public static BitSet toBitSet(double[] data)

toString

public static String[] toString(double[] data)